Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001238.1 Corchorus olitorius cultivar O-4 contig01238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3484
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35


Found at i:876 original size:32 final size:32

Alignment explanation


    Indices: 835--898  Score: 119
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        825 TTGTAAGTGT

                                      *     
        835 TTTGAAAAAAATATTAAAACATAAAATTCTTA
          1 TTTGAAAAAAATATTAAAACATAAAAATCTTA

                                            
        867 TTTGAAAAAAATATTAAAACATAAAAATCTTA
          1 TTTGAAAAAAATATTAAAACATAAAAATCTTA

        899 CTTCCATTTT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33


Consensus pattern (32 bp):   
TTTGAAAAAAATATTAAAACATAAAAATCTTA
Done.