Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012381.1 Corchorus olitorius cultivar O-4 contig12414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19534
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:8775 original size:19 final size:18

Alignment explanation


    Indices: 8751--8790  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       8741 TTGAAGATAT

                    *          
       8751 ATTGAAGATAATTTGAAGA
          1 ATTGAAGACAA-TTGAAGA

                     *        
       8770 ATTGAAGACCATTGAAGA
          1 ATTGAAGACAATTGAAGA

               
       8788 ATT
          1 ATT

       8791 ATTTCAAGTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  18   10  0.53
  19    9  0.47

ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30


Consensus pattern (18 bp):   
ATTGAAGACAATTGAAGA

Found at i:10081 original size:14 final size:16

Alignment explanation


    Indices: 10062--10095  Score: 54
    Period size: 14  Copynumber: 2.2  Consensus size: 16

      10052 GAAAAGAAGT

                            
      10062 TTGTTTTC-TTATT-A
          1 TTGTTTTCTTTATTAA

                            
      10076 TTGTTTTCTTTATTAA
          1 TTGTTTTCTTTATTAA

                
      10092 TTGT
          1 TTGT

      10096 CATAGCTTGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14    8  0.44
  15    5  0.28
  16    5  0.28

ACGTcount: A:0.15, C:0.06, G:0.09, T:0.71


Consensus pattern (16 bp):   
TTGTTTTCTTTATTAA

Done.