Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012383.1 Corchorus olitorius cultivar O-4 contig12416, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53953

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1938--1980
22
1.9
23
95
4
79
37
13
23
25
1.92
6981--7023
22
1.9
23
95
4
79
37
13
23
25
1.92
8899--8992
45
2.2
43
84
7
120
39
20
4
36
1.72
10955--11011
23
2.2
26
76
23
75
57
0
3
38
1.16
10965--11016
23
2.3
23
100
0
104
59
0
3
36
1.16
10973--11036
23
2.8
23
85
4
76
56
0
9
34
1.32
12528--12552
12
2.1
12
100
0
50
0
16
0
84
0.63
13841--13911
28
2.4
30
79
15
85
30
28
7
33
1.84
16201--16226
2
13.0
2
100
0
52
50
0
0
50
1.00
19641--19785
59
2.5
59
91
0
236
18
22
17
41
1.90
22505--22551
23
2.0
23
87
0
67
46
10
8
34
1.69
24903--24952
28
1.9
26
84
15
68
14
24
16
46
1.83
28938--29043
54
1.9
55
83
5
135
16
16
18
48
1.82
28993--29406
67
6.2
66
76
13
314
22
21
15
39
1.91
28993--29349
135
2.7
134
79
10
324
22
21
15
40
1.91
30783--30997
101
2.1
101
95
0
394
36
19
14
29
1.92
30783--31039
101
2.5
101
89
3
358
34
21
15
28
1.94
32416--32483
30
2.3
29
87
5
100
29
25
10
35
1.89
34915--35274
191
1.9
190
95
0
657
19
22
22
36
1.95
44334--44762
178
2.4
178
82
3
497
35
17
15
31
1.91

Tables:   1

The End!