Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012390.1 Corchorus olitorius cultivar O-4 contig12423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57601

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11112--11158
25
2.0
25
87
8
71
72
0
21
6
1.07
12964--12997
9
3.8
9
88
11
52
79
0
11
8
0.94
15097--15235
45
3.0
47
77
10
149
28
21
14
35
1.93
15166--15274
45
2.4
45
83
7
132
30
20
14
34
1.92
17372--17609
79
3.0
78
87
3
314
32
21
26
19
1.97
17372--17609
40
6.0
40
84
1
298
32
21
26
19
1.97
24829--24862
13
2.5
13
95
4
59
85
8
5
0
0.75
26161--26187
11
2.5
11
100
0
54
48
0
7
44
1.31
27087--27128
21
2.0
21
85
0
57
30
11
19
38
1.88
27144--27363
54
4.1
54
92
2
327
24
13
20
41
1.88
27426--27467
21
2.0
21
85
0
57
19
16
26
38
1.92
27560--27599
21
1.9
21
94
0
71
25
20
25
30
1.99
27609--27876
54
4.9
54
78
6
286
23
9
24
43
1.83
27608--27873
112
2.4
112
86
3
378
22
9
24
43
1.82
27830--27911
33
2.4
35
85
4
105
19
9
25
45
1.81
31047--31151
16
6.4
15
75
16
84
3
18
55
22
1.59
31076--31151
19
4.2
19
74
19
72
3
17
55
23
1.58
31060--31149
35
2.6
35
94
0
153
3
17
55
23
1.57
31702--31760
8
6.7
9
76
16
61
81
0
18
0
0.69
31700--31761
29
2.2
29
88
5
92
82
0
17
0
0.67
31711--31753
20
2.2
20
100
0
86
81
0
18
0
0.69
31694--31761
9
7.4
9
75
9
66
82
0
16
1
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44336--44907
77
7.4
77
75
13
451
25
16
22
36
1.94
44336--44910
118
5.0
114
82
7
606
24
16
22
36
1.94
44336--44902
41
14.6
39
74
13
318
24
16
22
36
1.94
44336--44910
231
2.5
232
84
5
698
24
16
22
36
1.94
46214--46264
16
3.2
16
77
0
57
5
17
52
23
1.66

Tables:   1

The End!