Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012395.1 Corchorus olitorius cultivar O-4 contig12428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28706

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6243--6268
11
2.4
11
100
0
52
69
7
15
7
1.35
8751--8823
21
3.4
21
73
1
56
15
17
47
19
1.82
12064--12113
24
2.0
25
85
11
68
44
10
6
40
1.63
12073--12123
24
2.0
24
88
11
75
39
9
9
41
1.71
18264--18296
2
17.0
2
87
6
50
48
3
0
48
1.17
23752--23897
79
1.8
79
84
5
197
29
23
18
28
1.98
26523--26548
9
2.9
9
100
0
52
42
0
0
57
0.98
26637--26723
3
29.0
3
76
4
59
41
1
3
54
1.25
26639--26721
15
5.7
15
71
16
77
42
1
3
53
1.26
26635--26723
30
3.0
30
76
16
103
41
2
3
52
1.30

Tables:   1

The End!