Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012398.1 Corchorus olitorius cultivar O-4 contig12431, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36725

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1941--1972
14
2.4
14
94
5
57
12
12
18
56
1.67
2244--2279
7
5.1
7
96
0
63
2
58
25
13
1.49
7872--7997
33
3.9
33
85
6
150
17
35
42
4
1.70
7872--7997
65
1.9
65
83
3
164
17
35
42
4
1.70
10815--10866
23
2.2
23
89
3
77
21
23
25
30
1.99
15257--15286
15
2.0
15
100
0
60
26
13
20
40
1.89
15801--15832
5
6.4
5
100
0
64
78
0
0
21
0.76
16532--16576
6
7.5
6
84
0
54
2
4
48
44
1.35
17106--17148
6
7.2
6
97
0
68
44
37
18
0
1.50
17106--17158
18
2.9
18
88
0
70
39
41
16
1
1.60
17108--17158
6
8.5
6
95
0
57
39
43
15
1
1.58
17328--17357
6
5.0
6
100
0
60
33
50
0
16
1.46
28038--28166
63
2.0
63
98
0
249
37
6
19
36
1.79
28387--28481
28
3.4
28
76
13
97
17
16
26
38
1.91
28387--28512
56
2.2
56
84
2
155
17
18
25
38
1.92
28406--28511
28
3.8
27
81
6
122
17
18
26
36
1.94
33652--33678
9
3.0
9
100
0
54
0
0
22
77
0.76
35731--35762
15
2.1
15
100
0
64
50
28
6
15
1.68
36347--36492
33
4.5
31
78
10
123
26
8
21
43
1.82

Tables:   1

The End!