Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000124.1 Corchorus olitorius cultivar O-4 contig00124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.26


Found at i:785 original size:46 final size:45

Alignment explanation


    Indices: 733--988  Score: 458
    Period size: 46  Copynumber: 5.6  Consensus size: 45

        723 AAATTGGTCC

                                                          
        733 TGAAGAAATTTATACCATCAGGATGGCAAAATTGGTCCTGATGGTG
          1 TGAAGAAATTTATACCATCAGGATGG-AAAATTGGTCCTGATGGTG

                                                          
        779 TGAAGAAATTTATACCATCAGGATGGAGAAATTGGTCCTGATGGTG
          1 TGAAGAAATTTATACCATCAGGATGGA-AAATTGGTCCTGATGGTG

                                                          
        825 TGAAGAAATTTATACCATCAGGATGGCAAAATTGGTCCTGATGGTG
          1 TGAAGAAATTTATACCATCAGGATGG-AAAATTGGTCCTGATGGTG

                              *                           
        871 TGAAGAAATTTATACCATAAGGATGGAGAAATTGGTCCTGATGGTG
          1 TGAAGAAATTTATACCATCAGGATGGA-AAATTGGTCCTGATGGTG

                                                          
        917 TGAAGAAATTTATACCATCAGGATGGGAAAATTGGTCCTGATGGTG
          1 TGAAGAAATTTATACCATCAGGAT-GGAAAATTGGTCCTGATGGTG

                                      
        963 TGAAGAAATTTATACCATCAGGATGG
          1 TGAAGAAATTTATACCATCAGGATGG

        989 GTGACGTTGC


Statistics
Matches: 204,  Mismatches: 2, Indels: 9
        0.95            0.01        0.04

Matches are distributed among these distances:
  45    4  0.02
  46  196  0.96
  47    4  0.02

ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28


Consensus pattern (45 bp):   
TGAAGAAATTTATACCATCAGGATGGAAAATTGGTCCTGATGGTG

Done.