Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012400.1 Corchorus olitorius cultivar O-4 contig12433, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35646

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2159--2306
38
3.9
38
90
1
235
25
18
33
22
1.97
5704--5853
38
3.9
38
87
3
212
24
18
34
22
1.96
9250--9397
38
3.9
38
87
1
208
24
20
34
20
1.96
11863--12010
38
3.9
38
92
1
235
23
18
35
22
1.96
12040--12095
6
9.3
6
94
0
94
19
0
30
50
1.48
14886--14924
17
2.3
17
83
12
53
5
17
10
66
1.39
17465--17506
21
2.0
21
86
9
59
26
28
16
28
1.97
18865--18909
21
2.1
21
91
0
72
40
20
8
31
1.83
20251--20292
21
2.0
21
100
0
84
19
28
9
42
1.82
26905--26939
17
2.1
17
100
0
70
37
5
34
22
1.78
33493--33530
17
2.2
17
90
0
58
50
21
21
7
1.74

Tables:   1

The End!