Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012401.1 Corchorus olitorius cultivar O-4 contig12434, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22094

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1485--1566
23
3.5
23
91
3
128
12
20
10
56
1.66
8814--8839
11
2.4
11
100
0
52
69
7
15
7
1.35
11348--11478
50
2.5
50
82
7
147
38
9
25
26
1.87
11463--11550
26
3.4
26
72
10
81
36
12
28
22
1.91
11751--11845
28
3.4
28
85
1
127
15
17
24
42
1.89
12616--12653
17
2.2
17
95
0
67
47
21
23
7
1.77
18095--18472
29
13.0
29
82
3
424
17
15
24
42
1.87
18131--18463
116
2.9
116
91
0
522
17
15
24
42
1.87
22055--22094
2
20.0
2
100
0
80
50
0
0
50
1.00

Tables:   1

The End!