genome.fa.s12402.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012402.1 Corchorus olitorius cultivar O-4 contig12435, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25125

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590--896	103	3.0	102	88	2	445	34	11	16	36	1.85
5904--6060	54	2.8	53	85	7	170	47	0	22	29	1.56
5958--6075	26	4.3	26	78	17	139	48	0	23	27	1.51
5966--6036	34	2.1	33	92	2	115	43	0	22	33	1.54
6521--6569	26	1.9	26	95	4	91	48	0	20	30	1.50
6546--6650	35	2.9	36	91	2	176	46	0	25	27	1.53
6579--6920	26	13.0	27	75	17	271	49	0	22	27	1.56
6614--6919	26	12.0	26	77	12	305	49	0	22	27	1.56
6713--6796	44	1.9	44	87	4	125	52	0	17	29	1.45
6662--6841	96	1.9	96	88	2	272	50	0	21	27	1.53
6890--6929	21	2.0	20	90	5	62	50	0	17	32	1.47
7091--7134	21	2.2	20	92	8	72	54	0	13	31	1.39
7091--7135	20	2.2	21	92	4	74	55	0	13	31	1.38
9362--9405	21	2.0	21	82	4	52	29	4	13	52	1.60
10050--10144	25	3.8	24	77	16	95	16	18	6	57	1.60
10072--10133	25	2.4	26	94	2	108	19	19	6	54	1.65
10163--10390	36	6.3	37	78	8	256	19	19	5	54	1.64
10167--10390	72	3.1	71	90	2	349	20	20	5	54	1.63
10113--10359	108	2.2	114	83	8	296	19	20	6	54	1.64
10300--10340	22	1.9	21	85	5	55	19	21	2	56	1.54
10396--10474	35	2.3	35	86	0	113	24	21	6	48	1.73
10422--10468	21	2.2	21	85	7	60	23	19	8	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10220--10447	15	15.9	14	66	12	63	21	19	5	53	1.64
10635--10754	32	3.8	32	86	4	161	29	13	7	50	1.69
17233--17275	22	1.9	22	90	4	68	4	2	13	79	1.00
17292--17346	28	1.9	29	81	3	67	41	9	12	36	1.75
24582--24641	25	2.4	25	81	13	63	66	1	0	31	1.01
24788--25001	117	1.8	118	89	2	342	36	10	1	51	1.46

Tables:   1

The End!