Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012407.1 Corchorus olitorius cultivar O-4 contig12440, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9013
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:8781 original size:22 final size:22

Alignment explanation


    Indices: 8739--8781  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       8729 GCTCGGTGGC

                            *     
       8739 ACCCGGACATGACCAGGCCATA
          1 ACCCGGACATGACCAGACCATA

                  *               
       8761 ACCCGGTCATGACTC-GACCAT
          1 ACCCGGACATGAC-CAGACCAT

       8782 GCCCCGCGCC


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  22   17  0.94
  23    1  0.06

ACGTcount: A:0.28, C:0.37, G:0.21, T:0.14


Consensus pattern (22 bp):   
ACCCGGACATGACCAGACCATA
Done.