Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012408.1 Corchorus olitorius cultivar O-4 contig12441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27299

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2782--2875
45
2.2
43
83
7
120
39
21
6
32
1.79
3524--3551
2
14.0
2
100
0
56
50
0
0
50
1.00
4331--4377
12
3.9
12
91
0
76
14
34
34
17
1.90
11156--11186
11
2.8
11
95
0
53
0
3
19
77
0.90
12072--12146
28
2.7
28
80
12
82
30
20
14
34
1.92
17592--17659
26
2.6
27
85
4
93
14
11
30
42
1.82
19678--19745
26
2.6
27
80
4
84
44
29
11
14
1.81
25504--25537
7
4.7
7
92
7
59
85
14
0
0
0.60
25823--25903
29
2.8
29
84
7
101
29
17
14
38
1.90
26026--26120
31
3.1
30
92
4
154
43
11
14
30
1.81
26026--26121
30
3.1
31
93
3
158
42
11
14
31
1.81
26727--26960
126
1.9
125
84
5
305
35
10
1
52
1.44
27060--27101
7
6.0
7
94
0
75
83
0
16
0
0.65
27146--27234
31
2.9
32
83
6
112
30
14
13
41
1.84

Tables:   1

The End!