Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001241.1 Corchorus olitorius cultivar O-4 contig01241, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37


Found at i:384 original size:65 final size:65

Alignment explanation


    Indices: 258--391  Score: 173
    Period size: 65  Copynumber: 2.1  Consensus size: 65

        248 TTTTGCAATT

                                                           * ** **        *  
        258 TTTTGTGGTCGACCGCCTAGATCCATTTGGGCGCTCGACCACATGTTTTTTTTTTTCTTTTTTTC
          1 TTTTGTGGTCGACCGCCTAGATCCATTTGGGCGCTCGACCACATGTTATCATCATTCTTTTTCTC

                                                   *                         
        323 TTTTGTGGTCGACCGCCTAGATCCATTTGGGCG-TCCGATCACATG-TATCATCATTCATTTTTC
          1 TTTTGTGGTCGACCGCCTAGATCCATTTGGGCGCT-CGACCACATGTTATCATCATTC-TTTTTC

              
        386 TC
         64 TC

                
        388 TTTT
          1 TTTT

        392 TTTTTTGTGT


Statistics
Matches: 60,  Mismatches: 7, Indels: 4
        0.85            0.10        0.06

Matches are distributed among these distances:
  64    7  0.12
  65   53  0.88

ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45


Consensus pattern (65 bp):   
TTTTGTGGTCGACCGCCTAGATCCATTTGGGCGCTCGACCACATGTTATCATCATTCTTTTTCTC
Done.