Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012411.1 Corchorus olitorius cultivar O-4 contig12444, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4806
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30


Found at i:549 original size:2 final size:2

Alignment explanation


    Indices: 542--570  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

        532 TACTATTTAG

                                                       
        542 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        571 GTTTTATAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:2051 original size:15 final size:16

Alignment explanation


    Indices: 2031--2068  Score: 53
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       2021 AGTTCAAATG

                            
       2031 TCGGGTC-ATTTGGGT
          1 TCGGGTCAATTTGGGT

                             
       2046 TCGGGTCAATTCTGGGT
          1 TCGGGTCAATT-TGGGT

                   
       2063 T-GGGTC
          1 TCGGGTC

       2069 GTTTTCGGTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    7  0.33
  16    8  0.38
  17    6  0.29

ACGTcount: A:0.08, C:0.16, G:0.39, T:0.37


Consensus pattern (16 bp):   
TCGGGTCAATTTGGGT
Done.