Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012412.1 Corchorus olitorius cultivar O-4 contig12445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13347
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27


Found at i:11554 original size:21 final size:22

Alignment explanation


    Indices: 11523--11563  Score: 66
    Period size: 21  Copynumber: 1.9  Consensus size: 22

      11513 GCATAATCTC

                       *          
      11523 TAAAATCAGGGGTCAAATTGAA
          1 TAAAATCAGGGATCAAATTGAA

                                
      11545 TAAAA-CAGGGATCAAATTG
          1 TAAAATCAGGGATCAAATTG

      11564 CATTTAATTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   13  0.72
  22    5  0.28

ACGTcount: A:0.46, C:0.10, G:0.22, T:0.22


Consensus pattern (22 bp):   
TAAAATCAGGGATCAAATTGAA
Done.