Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012414.1 Corchorus olitorius cultivar O-4 contig12447, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4230
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:2717 original size:30 final size:30

Alignment explanation


    Indices: 2681--2741  Score: 122
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       2671 ACTTTCTTAG

                                          
       2681 AGGATTTATTCCTCCAGGATACAACAAAGC
          1 AGGATTTATTCCTCCAGGATACAACAAAGC

                                          
       2711 AGGATTTATTCCTCCAGGATACAACAAAGC
          1 AGGATTTATTCCTCCAGGATACAACAAAGC

             
       2741 A
          1 A

       2742 AAACTCTCCA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23


Consensus pattern (30 bp):   
AGGATTTATTCCTCCAGGATACAACAAAGC
Done.