Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012418.1 Corchorus olitorius cultivar O-4 contig12451, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3404
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35


Found at i:1621 original size:2 final size:2

Alignment explanation


    Indices: 1614--1653  Score: 71
    Period size: 2  Copynumber: 20.0  Consensus size: 2

       1604 CTTTAACTAG

                                  *                                    
       1614 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       1654 AGTTAAAATG


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:3334 original size:13 final size:13

Alignment explanation


    Indices: 3316--3343  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       3306 TATAGATCTC

                         
       3316 AAGAGGTGTGTTA
          1 AAGAGGTGTGTTA

                         
       3329 AAGAGGTGTGTTA
          1 AAGAGGTGTGTTA

              
       3342 AA
          1 AA

       3344 CACCCTTTGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.36, C:0.00, G:0.36, T:0.29


Consensus pattern (13 bp):   
AAGAGGTGTGTTA
Done.