Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012420.1 Corchorus olitorius cultivar O-4 contig12453, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24077

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
757--781
11
2.3
11
100
0
50
8
0
28
64
1.22
808--850
23
1.9
23
85
4
61
53
2
6
37
1.41
808--858
23
2.2
23
82
6
59
50
1
9
37
1.47
2105--2134
12
2.4
13
94
5
53
16
6
10
66
1.41
6832--6872
21
2.0
21
85
9
57
19
43
24
12
1.85
18138--18279
76
1.9
72
84
8
187
34
12
21
31
1.91
18680--18729
21
2.4
21
82
0
64
78
4
6
12
1.08
18679--18719
12
3.4
12
89
0
55
80
4
4
9
1.00
18703--18736
9
3.6
9
92
8
50
76
0
14
8
1.01
18724--18756
7
4.6
7
96
3
57
72
0
24
3
0.98
19117--19148
3
10.7
3
100
0
64
68
0
0
31
0.90
19761--19961
49
4.1
49
90
1
287
34
16
12
36
1.87
20693--20789
50
1.9
50
89
0
149
29
25
19
24
1.98
20583--20858
119
2.3
118
94
1
471
28
27
18
26
1.98
20743--20976
69
3.4
69
88
4
337
27
29
17
25
1.98
21001--21135
51
2.7
51
91
3
211
38
11
22
27
1.89

Tables:   1

The End!