Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012424.1 Corchorus olitorius cultivar O-4 contig12457, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44516

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
306--340
16
2.2
16
90
5
54
8
14
31
45
1.75
2126--2425
132
2.3
133
95
1
532
38
8
2
51
1.46
5283--5338
24
2.4
24
84
3
69
32
3
1
62
1.23
7586--7627
21
2.0
21
100
0
84
33
19
0
47
1.49
11560--11638
37
2.1
37
90
4
124
34
16
15
34
1.90
11595--11834
52
4.6
52
88
2
347
26
19
16
37
1.93
11595--11827
103
2.3
103
86
2
324
26
20
16
36
1.93
12073--12184
46
2.4
46
98
0
215
55
9
7
27
1.59
35797--35870
27
2.8
26
85
6
103
36
25
17
20
1.94
35797--35888
27
3.4
27
81
3
78
36
26
17
19
1.94
36141--36577
90
4.9
90
84
5
557
30
24
16
27
1.97
36596--36683
34
2.6
33
82
8
106
31
23
17
27
1.97
36654--36774
42
2.9
42
87
0
170
30
26
17
25
1.97
36762--37413
90
7.3
90
88
2
920
32
25
16
25
1.96
36762--37413
268
2.4
269
89
3
990
32
25
16
25
1.96
37415--37686
54
5.1
54
80
3
280
33
22
15
28
1.95
37416--37686
107
2.5
108
84
3
332
33
22
15
28
1.94
42959--42994
19
1.9
18
88
5
54
41
8
22
27
1.82

Tables:   1

The End!