Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012428.1 Corchorus olitorius cultivar O-4 contig12461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40368

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
168--258
45
2.0
45
97
0
173
43
24
9
21
1.83
530--580
6
8.5
6
97
0
75
25
33
5
35
1.80
2864--2889
2
13.0
2
100
0
52
0
0
50
50
1.00
2889--2924
2
18.0
2
100
0
72
50
0
50
0
1.00
7667--7698
15
2.1
15
100
0
64
25
0
12
62
1.30
8066--8128
32
1.9
33
87
6
92
15
11
1
71
1.22
8840--8903
34
1.9
33
84
12
87
67
1
15
15
1.32
12365--12399
18
1.9
18
88
0
52
22
5
8
62
1.45
15682--15823
49
3.0
47
85
9
180
52
5
14
27
1.64
18593--18635
13
3.5
13
75
12
54
30
9
18
41
1.82
18589--18635
24
2.0
24
100
0
94
29
8
19
42
1.80
20065--20313
36
7.1
35
68
20
164
28
18
15
38
1.91
20218--20272
28
2.0
28
85
0
74
29
23
14
32
1.94
20105--20386
141
2.0
141
97
0
537
27
19
16
36
1.93
23349--23391
17
2.5
17
92
0
68
41
34
6
16
1.75
28912--28962
18
2.8
18
80
11
68
52
9
9
27
1.65
39050--39122
26
2.7
27
80
4
85
17
13
27
41
1.88

Tables:   1

The End!