Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012429.1 Corchorus olitorius cultivar O-4 contig12462, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41930

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94--131
16
2.5
15
87
8
51
73
0
18
7
1.06
4510--4544
11
3.2
11
91
0
61
80
17
2
0
0.84
18187--18290
22
4.9
23
77
14
107
33
9
16
40
1.81
18317--18557
22
10.8
22
69
13
84
39
11
15
34
1.83
18344--18396
27
2.0
27
84
0
70
50
5
7
35
1.54
18429--18552
44
2.8
44
80
4
117
37
13
15
33
1.87
18475--18573
22
4.5
22
82
2
92
42
9
13
35
1.75
18475--18578
44
2.4
44
81
0
118
43
9
12
34
1.75
18655--18717
22
2.8
23
83
7
85
36
7
22
33
1.83
18790--18867
22
3.6
21
72
13
61
42
7
14
35
1.74
18882--19021
22
6.6
21
71
14
101
35
9
17
37
1.82
18882--19065
44
4.3
44
74
13
125
35
9
16
38
1.82
19079--19195
22
5.4
22
73
8
69
38
7
18
35
1.80
19100--19225
22
5.8
21
74
14
69
37
6
17
38
1.75
19410--19553
22
6.6
21
75
6
92
35
13
11
39
1.81
20928--21024
46
2.1
45
90
5
151
37
19
6
37
1.77
20613--21276
22
30.7
21
69
15
243
35
16
8
39
1.80
21287--21457
22
7.9
22
74
8
91
35
12
9
41
1.77
21290--21478
44
4.4
42
78
11
136
35
12
9
42
1.76
21314--21704
22
17.6
22
67
20
113
35
15
9
39
1.81
21578--21943
66
5.3
65
71
13
232
36
17
9
35
1.83
21449--21655
112
1.8
115
80
9
253
33
16
10
39
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21757--21940
22
8.3
22
72
12
135
36
18
9
35
1.84
22159--22500
176
2.0
173
85
7
468
43
7
11
37
1.70
23887--23991
43
2.4
44
82
4
124
40
14
7
38
1.74
23975--24072
21
4.5
21
77
10
63
33
17
8
40
1.79
23888--24073
22
8.5
22
73
14
136
36
16
8
38
1.79
26972--27031
6
10.0
6
90
0
75
46
0
8
45
1.33
26972--27031
4
15.0
4
85
0
75
46
0
8
45
1.33
27986--28070
45
1.9
43
95
0
134
40
21
4
34
1.74
31491--31533
22
2.0
22
90
4
70
23
20
9
46
1.79
32089--32407
160
2.0
159
93
0
548
39
7
19
33
1.80
32689--32752
2
31.5
2
77
3
56
51
3
4
40
1.38
33957--34014
23
2.5
24
83
8
75
43
8
17
31
1.79
34182--34206
12
2.1
12
100
0
50
40
0
8
52
1.31
34814--34840
2
13.5
2
100
0
54
51
0
0
48
1.00
40143--40177
7
5.0
7
85
0
52
42
25
11
20
1.85
41479--41568
45
2.1
43
89
6
137
38
22
4
34
1.74

Tables:   1

The End!