genome.fa.s12435.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012435.1 Corchorus olitorius cultivar O-4 contig12468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38317

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2081--2150	36	1.9	36	91	0	113	21	10	8	60	1.55
2636--3053	210	2.0	202	92	5	694	44	8	10	36	1.70
3834--3858	4	6.2	4	100	0	50	0	24	0	76	0.80
4090--4231	70	2.0	70	98	0	275	29	19	24	26	1.98
8944--9082	59	2.4	59	98	0	269	37	15	15	31	1.89
8957--9056	30	3.4	30	69	8	105	40	15	18	27	1.89
9077--9133	26	2.2	26	87	3	78	36	8	19	35	1.83
9086--9136	26	2.0	26	100	0	102	27	11	23	37	1.90
9129--9325	59	3.3	59	92	2	315	37	17	17	26	1.93
9165--9262	30	3.3	30	71	13	103	40	17	16	25	1.90
8904--9290	208	1.9	208	94	0	693	36	15	17	31	1.91
9365--9527	59	2.7	59	83	6	222	31	18	15	34	1.92
10616--10937	166	1.9	165	90	0	509	33	22	15	28	1.94
20534--20581	24	2.0	24	100	0	96	20	25	16	37	1.93
24036--24060	13	1.9	13	100	0	50	36	0	0	64	0.94
26854--26915	25	2.6	24	84	5	72	59	6	6	27	1.47
29257--29285	7	4.3	7	91	8	51	72	0	0	27	0.85
29491--29531	6	6.8	6	97	0	64	17	17	43	21	1.87
31373--31539	54	3.1	54	73	2	183	20	19	20	38	1.94
31345--31555	108	1.9	109	89	2	327	22	19	21	36	1.95
35135--35180	24	1.9	24	95	0	83	34	6	6	52	1.53
37203--37245	2	21.5	2	90	9	70	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37232--37320	38	2.3	39	94	1	153	39	7	5	47	1.56

Tables:   1

The End!