Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012437.1 Corchorus olitorius cultivar O-4 contig12470, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16653
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.29


Found at i:10307 original size:13 final size:13

Alignment explanation


    Indices: 10289--10423  Score: 207
    Period size: 13  Copynumber: 10.4  Consensus size: 13

      10279 AACACTTAAC

                   *  *  
      10289 AACTGCTTAACTA
          1 AACTGCTCAATTA

                         
      10302 AACTGCTCAATTA
          1 AACTGCTCAATTA

             *   *       
      10315 AGCTGTTCAATTA
          1 AACTGCTCAATTA

                      *  
      10328 AACTGCTCAACTA
          1 AACTGCTCAATTA

                         
      10341 AACTGCTCAATTA
          1 AACTGCTCAATTA

                         
      10354 AACTGCTCAATTA
          1 AACTGCTCAATTA

                      *  
      10367 AACTGCTCAACTA
          1 AACTGCTCAATTA

                         
      10380 AACTGCTCAATTA
          1 AACTGCTCAATTA

                         
      10393 AACTGCTCAATTA
          1 AACTGCTCAATTA

                     *   
      10406 AACTGCTCAGTTA
          1 AACTGCTCAATTA

                 
      10419 AACTG
          1 AACTG

      10424 AAGATTCAAT


Statistics
Matches: 111,  Mismatches: 11, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  13  111  1.00

ACGTcount: A:0.37, C:0.24, G:0.10, T:0.30


Consensus pattern (13 bp):   
AACTGCTCAATTA

Done.