Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012438.1 Corchorus olitorius cultivar O-4 contig12471, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17701

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
687--796
58
1.9
58
88
3
168
33
14
18
33
1.91
1790--1859
36
1.9
36
91
0
113
21
10
8
60
1.55
2374--2786
205
2.0
203
93
3
706
44
8
10
36
1.70
6866--6945
41
2.0
40
90
7
126
30
12
15
42
1.83
6947--6982
13
2.8
13
86
0
54
33
8
41
16
1.78
9751--9796
22
2.1
22
84
4
58
17
2
32
47
1.60
13607--13632
12
2.2
12
100
0
52
26
0
23
50
1.50
14986--15158
22
7.8
22
77
8
118
41
16
9
32
1.81
14931--15479
44
12.2
44
69
12
170
35
17
10
35
1.85
14986--15110
66
1.9
65
81
4
153
41
12
11
34
1.79
15098--15162
23
2.9
22
84
6
85
40
24
6
29
1.79
15236--15494
22
11.7
22
73
12
165
32
16
11
39
1.84
15238--15412
65
2.6
66
79
6
174
31
16
11
40
1.84
15239--15496
109
2.3
111
80
7
281
32
16
11
39
1.84

Tables:   1

The End!