Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012442.1 Corchorus olitorius cultivar O-4 contig12475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45676
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:4268 original size:17 final size:17
Alignment explanation
Indices: 4236--4283 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
4226 ACACTAACTT
*
4236 GAAAAAAA-AAAAGAAA
1 GAAAAAAAGAAAGGAAA
*
4252 -AACAAAAGGAAAGGAAA
1 GAA-AAAAAGAAAGGAAA
4269 GAAAAAAAGAAAGGA
1 GAAAAAAAGAAAGGA
4284 CCCAAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 2 0.08
16 4 0.15
17 18 0.69
18 2 0.08
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (17 bp):
GAAAAAAAGAAAGGAAA
Found at i:11215 original size:5 final size:5
Alignment explanation
Indices: 11205--11231 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
11195 TCTTGTTGGT
11205 AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AA
11232 CATTAACAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:15281 original size:255 final size:255
Alignment explanation
Indices: 14830--15342 Score: 882
Period size: 255 Copynumber: 2.0 Consensus size: 255
14820 TTCAGCAGAA
* *
14830 CTACTAGAATTGCAAATAATGTCATTATTAGAGCCATCTTCAAGAGTCTGGTGCAAATATTCGTG
1 CTACTAGAATTGCAAATAATGACATTATTAGAGCCACCTTCAAGAGTCTGGTGCAAATATTCGTG
*
14895 AGCTTCACTGGTTACTTTTTGAGAAATAGGCATTTGCACTGGTTCTTGATCTTGTGTGGAGAACG
66 AGCTTCACTGGATACTTTTTGAGAAATAGGCATTTGCACTGGTTCTTGATCTTGTGTGGAGAACG
* * * *
14960 ACTTCTTGCTGCTATCAACATCACTAGAACCAGACGAATACCTTGCAAAGTAATTAGCTTTCTTA
131 ACTTCTTGCTGCTATCAACATCACCAGAACCAGAAGAATACCTTCCAAAATAATTAGCTTTCTTA
15025 AATGCACCTGTATATTCACCATCAGGAGAAAGTCCAACATCAGATTGCTCATAAACATTT
196 AATGCACCTGTATATTCACCATCAGGAGAAAGTCCAACATCAGATTGCTCATAAACATTT
* * * *
15085 CTACTAGTATTGCAAATAATGACATTATTTGAGCCACCTTCAAGATTTTGGTGCAAATATTCGTG
1 CTACTAGAATTGCAAATAATGACATTATTAGAGCCACCTTCAAGAGTCTGGTGCAAATATTCGTG
* *
15150 AGCTTCACTGGATACTTTTTGAGTAATAGGTATTTGCACTGGTTCTTGATCTTGTGTGGAGAACG
66 AGCTTCACTGGATACTTTTTGAGAAATAGGCATTTGCACTGGTTCTTGATCTTGTGTGGAGAACG
* *
15215 ACTTCTTGCTGTTATCAACATCACCAGAACCAGAAGAATACCTTCCAAAATAGTTAGCTTTCTTA
131 ACTTCTTGCTGCTATCAACATCACCAGAACCAGAAGAATACCTTCCAAAATAATTAGCTTTCTTA
*
15280 AATGCACCTGTATATTCACCTTCAGGAGAAAGTCCAACATCAGATTGCTCATAAACATTT
196 AATGCACCTGTATATTCACCATCAGGAGAAAGTCCAACATCAGATTGCTCATAAACATTT
15340 CTA
1 CTA
15343 GTATGTGGCT
Statistics
Matches: 242, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
255 242 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (255 bp):
CTACTAGAATTGCAAATAATGACATTATTAGAGCCACCTTCAAGAGTCTGGTGCAAATATTCGTG
AGCTTCACTGGATACTTTTTGAGAAATAGGCATTTGCACTGGTTCTTGATCTTGTGTGGAGAACG
ACTTCTTGCTGCTATCAACATCACCAGAACCAGAAGAATACCTTCCAAAATAATTAGCTTTCTTA
AATGCACCTGTATATTCACCATCAGGAGAAAGTCCAACATCAGATTGCTCATAAACATTT
Found at i:27244 original size:24 final size:24
Alignment explanation
Indices: 27217--27266 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
27207 CCCGATCCAC
27217 CTAATAATTTCTCATAAATTTGCT
1 CTAATAATTTCTCATAAATTTGCT
27241 CTAATAATTTCTCATAAATTTGCT
1 CTAATAATTTCTCATAAATTTGCT
27265 CT
1 CT
27267 GGGGTCATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.18, G:0.04, T:0.46
Consensus pattern (24 bp):
CTAATAATTTCTCATAAATTTGCT
Found at i:31638 original size:33 final size:33
Alignment explanation
Indices: 31559--31654 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
31549 CACCAAGACC
* *
31559 CTTGAATCAAATCTTAAAGCAAAAAAGCTAAAA
1 CTTGAATCAAATCTTGAAGCAGAAAAGCTAAAA
* *
31592 ATT--ATCACCAATCTTGAAGCAGAAAAGC-AAACT
1 CTTGAATCA--AATCTTGAAGCAGAAAAGCTAAA-A
31625 CTTGAATCAAATCTTGAAGCAGAAAAGCTA
1 CTTGAATCAAATCTTGAAGCAGAAAAGCTA
31655 TCAAATTATC
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
31 4 0.08
32 3 0.06
33 40 0.77
34 1 0.02
35 4 0.08
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (33 bp):
CTTGAATCAAATCTTGAAGCAGAAAAGCTAAAA
Found at i:32367 original size:19 final size:19
Alignment explanation
Indices: 32343--32379 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
32333 ATCAATAAAA
32343 TTTCATTT-ACCTCCAATTC
1 TTTCATTTGA-CTCCAATTC
32362 TTTCATTTGACTCCAATT
1 TTTCATTTGACTCCAATT
32380 TTTATTGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.22, C:0.27, G:0.03, T:0.49
Consensus pattern (19 bp):
TTTCATTTGACTCCAATTC
Found at i:32494 original size:71 final size:69
Alignment explanation
Indices: 32362--32540 Score: 277
Period size: 71 Copynumber: 2.6 Consensus size: 69
32352 CCTCCAATTC
* * *
32362 TTTCATTTGACTCCAATTTTTATTGCCTTATTTCTTTTTTGTCTTATTTCCAGACATGAAATAAT
1 TTTCATTTGGCTCCAATTTTTATTGCCTTATTT-TTTTTTGACTTATTTCCAGACACGAAATAAT
32427 AAAAT
65 AAAAT
* *
32432 TTTCTTTTGGCTCCAATTTTTATTGCCCTATCTTTTTTCTTGACTTATTTCCAGACACGAAATAA
1 TTTCATTTGGCTCCAATTTTTATTGCCTTAT-TTTTTT-TTGACTTATTTCCAGACACGAAATAA
32497 TAAAAT
64 TAAAAT
*
32503 TTTCATTTGGCTCTAATTTTTATTGCCTTATTTTTTTT
1 TTTCATTTGGCTCCAATTTTTATTGCCTTATTTTTTTT
32541 GTGCGTACAG
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
69 1 0.01
70 38 0.38
71 60 0.61
ACGTcount: A:0.23, C:0.17, G:0.08, T:0.52
Consensus pattern (69 bp):
TTTCATTTGGCTCCAATTTTTATTGCCTTATTTTTTTTTGACTTATTTCCAGACACGAAATAATA
AAAT
Found at i:33811 original size:12 final size:12
Alignment explanation
Indices: 33794--33820 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33784 AAATAGAAAA
33794 TAATTATAAATT
1 TAATTATAAATT
33806 TAATTATAAATT
1 TAATTATAAATT
33818 TAA
1 TAA
33821 AGTCTTGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATTATAAATT
Found at i:34108 original size:22 final size:22
Alignment explanation
Indices: 34080--34134 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
34070 TAGATTATTG
34080 AAATTTCATAGTGTCGCTATC-A
1 AAATTTCATAGTGTCGCTA-CAA
* * *
34102 AAATTTCATAATGTGGTTACAA
1 AAATTTCATAGTGTCGCTACAA
34124 AAATTTCATAG
1 AAATTTCATAG
34135 AAGGTAATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (22 bp):
AAATTTCATAGTGTCGCTACAA
Found at i:34224 original size:22 final size:22
Alignment explanation
Indices: 34191--34245 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
34181 GATTAACACT
34191 AAATTCTC-TAGGGAAGTTATCA
1 AAATTC-CATAGGGAAGTTATCA
* *
34213 ACATTCCATAGGGAGGTTATCA
1 AAATTCCATAGGGAAGTTATCA
*
34235 AAATTTCATAG
1 AAATTCCATAG
34246 TTTGATTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (22 bp):
AAATTCCATAGGGAAGTTATCA
Found at i:34522 original size:22 final size:21
Alignment explanation
Indices: 34337--34522 Score: 108
Period size: 22 Copynumber: 8.5 Consensus size: 21
34327 CATTAAAATT
*
34337 AATTTCATATAGAGGTTATCACA
1 AATTTCATA-GGAGGTTATCA-A
**
34360 AATTT-ATACTATGGTTATCAA
1 AATTTCATAGGA-GGTTATCAA
* * * *
34381 AATTTCAGAGTGTGGTGACCAA
1 AATTTCATAG-GAGGTTATCAA
*
34403 AATTTCATAGGATGGTTATCAG
1 AATTTCATAGGA-GGTTATCAA
*
34425 AATTTCAAAGTGTA-GTTATCAA
1 AATTTCATAG-G-AGGTTATCAA
* * * *
34447 AGTTCCACAGGGAGGTTATCAC
1 AATTTCATA-GGAGGTTATCAA
*
34469 AATTTCTTAAGGAGGTTATCAA
1 AATTTCAT-AGGAGGTTATCAA
* *
34491 AATAAT-ATAGCGAGATTATCAA
1 AAT-TTCATAG-GAGGTTATCAA
34513 AATTTCATAG
1 AATTTCATAG
34523 TAAAACTATG
Statistics
Matches: 123, Mismatches: 28, Indels: 25
0.70 0.16 0.14
Matches are distributed among these distances:
21 12 0.10
22 101 0.82
23 9 0.07
24 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (21 bp):
AATTTCATAGGAGGTTATCAA
Found at i:34759 original size:22 final size:22
Alignment explanation
Indices: 34734--34782 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
34724 AGTTTATCAG
*
34734 AATTTTATAGGGTAATTATAAA
1 AATTTCATAGGGTAATTATAAA
* * * *
34756 AATTCCATAGTGTAGTTATCAA
1 AATTTCATAGGGTAATTATAAA
34778 AATTT
1 AATTT
34783 AATAAAAATA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (22 bp):
AATTTCATAGGGTAATTATAAA
Found at i:38113 original size:15 final size:14
Alignment explanation
Indices: 38095--38141 Score: 51
Period size: 16 Copynumber: 3.2 Consensus size: 14
38085 CTAAATTGAC
38095 ATTATTAAAATTTA
1 ATTATTAAAATTTA
*
38109 TATTATTTAAAAATTA
1 -ATTA-TTAAAATTTA
38125 ATTA-TAAAATTTCA
1 ATTATTAAAATTT-A
38139 ATT
1 ATT
38142 TAGACCGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 7 0.25
14 4 0.14
15 8 0.29
16 9 0.32
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
ATTATTAAAATTTA
Found at i:38625 original size:22 final size:22
Alignment explanation
Indices: 38590--38940 Score: 104
Period size: 22 Copynumber: 15.7 Consensus size: 22
38580 GTCTCTGTGT
*
38590 GGTTAACAAAATTTCATAAGGA
1 GGTTATCAAAATTTCATAAGGA
* **
38612 GGTTA-CTAATATTTCATGGGGA
1 GGTTATC-AAAATTTCATAAGGA
*
38634 GGTTATCAAAATTTCAT-AGTGT
1 GGTTATCAAAATTTCATAAG-GA
** * *
38656 GGTTATCAAAATTTTTTTAGTGC
1 GGTTATCAAAATTTCATAAG-GA
*
38679 GGTTATCAAAATTTCATATA-AA
1 GGTTATCAAAATTTCATA-AGGA
*
38701 GGTTATAAAAGTTTCAATTTCATAAGGA
1 GGTTAT-CAA-----AATTTCATAAGGA
* * *
38729 -G-TACCAAAATTTGATAA-AA
1 GGTTATCAAAATTTCATAAGGA
*
38748 GGTTATC-AAATCTCATATAGTGA
1 GGTTATCAAAATTTCATA-AG-GA
*
38771 --TTATCGAAATTTCAT-AGAGA
1 GGTTATCAAAATTTCATAAG-GA
* **
38791 TCGGATCATCAAAATTTCAT-AGTTT
1 --GG-TTATCAAAATTTCATAAG-GA
*
38816 TGTTATCAAAATTTCA-AAGCGA
1 GGTTATCAAAATTTCATAAG-GA
* *
38838 GGTTATC-AAATTACATAA-TA
1 GGTTATCAAAATTTCATAAGGA
* *
38858 TGATTATCAAAATTTTATAGAGG-
1 -GGTTATCAAAATTTCATA-AGGA
* * *
38881 GGTCAACAAAATTTTAT-AGAGA
1 GGTTATCAAAATTTCATAAG-GA
* * * *
38903 AGTTATTAAAATTTCTTAAAGA
1 GGTTATCAAAATTTCATAAGGA
* *
38925 GGTTAACAAATTTTCA
1 GGTTATCAAAATTTCA
38941 AGATGTGACT
Statistics
Matches: 239, Mismatches: 58, Indels: 64
0.66 0.16 0.18
Matches are distributed among these distances:
19 1 0.00
20 25 0.10
21 25 0.10
22 130 0.54
23 26 0.11
24 1 0.00
25 17 0.07
26 2 0.01
27 2 0.01
28 10 0.04
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (22 bp):
GGTTATCAAAATTTCATAAGGA
Found at i:38682 original size:23 final size:23
Alignment explanation
Indices: 38634--38696 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
38624 TTCATGGGGA
*
38634 GGTTATCAAAA-TTTCATAGTGT
1 GGTTATCAAAATTTTCATAGTGC
**
38656 GGTTATCAAAATTTTTTTAGTGC
1 GGTTATCAAAATTTTCATAGTGC
38679 GGTTATCAAAA-TTTCATA
1 GGTTATCAAAATTTTCATA
38697 TAAAGGTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 16 0.46
23 19 0.54
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.43
Consensus pattern (23 bp):
GGTTATCAAAATTTTCATAGTGC
Found at i:39092 original size:22 final size:22
Alignment explanation
Indices: 39064--39601 Score: 186
Period size: 22 Copynumber: 24.7 Consensus size: 22
39054 TCAAGGAGAA
39064 TATCAAAATTTCATATGAAGGT
1 TATCAAAATTTCATATGAAGGT
* *
39086 TATCAAAATTTCATAAGAGGGT
1 TATCAAAATTTCATATGAAGGT
* *
39108 TATCAAAATTTCATA-GTATGT
1 TATCAAAATTTCATATGAAGGT
* * * *
39129 AGATCAAAATTTCATAGGGAGAT
1 -TATCAAAATTTCATATGAAGGT
* *
39152 TAACAAAATTTCAGAATG-AGGT
1 TATCAAAATTTCA-TATGAAGGT
** * *
39174 TATCAAAAAATCATAGGGAGGT
1 TATCAAAATTTCATATGAAGGT
*
39196 TATCAAAA--T--T-TGTA-GT
1 TATCAAAATTTCATATGAAGGT
* *
39212 TATCAAGATTTCATAAGAAGGT
1 TATCAAAATTTCATATGAAGGT
** * *
39234 TAT-AAAATTTTTTTAGGGAGGTT
1 TATCAAAA-TTTCATATGAAGG-T
* **
39257 TATCAAAATTTTATGGGAAGGTT
1 TATCAAAATTTCATATGAAGG-T
*
39280 TATC-AAATTTCGTA-GCAAGGT
1 TATCAAAATTTCATATG-AAGGT
* * *
39301 TATCACAATTTCATAATG-TGAT
1 TATCAAAATTTCAT-ATGAAGGT
* * *
39323 TATCAAAATTTCAGAGTG-TGAT
1 TATCAAAATTTCATA-TGAAGGT
* *
39345 TA-CTAACAA-TTCCTATGGAGGT
1 TATC-AA-AATTTCATATGAAGGT
* * * * * *
39367 TTTTAAATTTTCACAACG-TGGT
1 TATCAAAATTTCA-TATGAAGGT
* * *
39389 TATCAATATATCATATGGAGGT
1 TATCAAAATTTCATATGAAGGT
* * **
39411 TATCAACATCTCATAGTGTTGGT
1 TATCAAAATTTCATA-TGAAGGT
*
39434 TATCAAAATTTAAT-TGGGAA-GT
1 TATCAAAATTTCATAT--GAAGGT
39456 TATCAAAATTTCATAGTG-AGGT
1 TATCAAAATTTCATA-TGAAGGT
* *
39478 CT-TCAAAATTCCTTA-GACAGGT
1 -TATCAAAATTTCATATGA-AGGT
* *
39500 TAACAAAATTTCATAAGAAGGT
1 TATCAAAATTTCATATGAAGGT
* * ** *
39522 TA-AAAAATTTTATAAAAAGAT
1 TATCAAAATTTCATATGAAGGT
* * * **
39543 TCTCGAAATTCCATA-GTATCGT
1 TATCAAAATTTCATATG-AAGGT
* *
39565 TATTAAAATTTCATAGGAAGGT
1 TATCAAAATTTCATATGAAGGT
39587 TATCAAAATTTCATA
1 TATCAAAATTTCATA
39602 AGGAGATCGT
Statistics
Matches: 382, Mismatches: 95, Indels: 78
0.69 0.17 0.14
Matches are distributed among these distances:
16 9 0.02
17 2 0.01
18 2 0.01
20 3 0.01
21 42 0.11
22 267 0.70
23 51 0.13
24 6 0.02
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (22 bp):
TATCAAAATTTCATATGAAGGT
Found at i:39268 original size:23 final size:24
Alignment explanation
Indices: 39228--39286 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
39218 GATTTCATAA
*
39228 GAAGG-TTAT-AAAATTTTTTTAGG
1 GAAGGTTTATCAAAATTTTTAT-GG
39251 G-AGGTTTATCAAAA-TTTTATGG
1 GAAGGTTTATCAAAATTTTTATGG
39273 GAAGGTTTATCAAA
1 GAAGGTTTATCAAA
39287 TTTCGTAGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 6 0.19
23 22 0.69
24 4 0.12
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (24 bp):
GAAGGTTTATCAAAATTTTTATGG
Found at i:42356 original size:34 final size:34
Alignment explanation
Indices: 42313--42377 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
42303 CCTTGAATCA
* *
42313 AATCTGGAAGTAGAAAAGCTATCATATTATCACC
1 AATCTGGAAGCAGAAAAGCTATCAAATTATCACC
42347 AATCTGGAAGCAGAAAAGCTATCAAATTATC
1 AATCTGGAAGCAGAAAAGCTATCAAATTATC
42378 GTTAAGACCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (34 bp):
AATCTGGAAGCAGAAAAGCTATCAAATTATCACC
Found at i:42488 original size:75 final size:75
Alignment explanation
Indices: 42365--42514 Score: 230
Period size: 75 Copynumber: 2.0 Consensus size: 75
42355 AGCAGAAAAG
*** *
42365 CTATCAAATTATCGTTAAGACCCTTAATCAAATCTTGAAGCAGAAAAGCTATCAAATTATCAATT
1 CTATCAAATTATCACCAAGACCCTTAATCAAATCTTGAAGCAAAAAAGCTATCAAATTATCAATT
42430 CAAGAATTTT
66 CAAGAATTTT
*
42440 CTATCAAATTATCACCAAGA-CCTTGAGTCAAATCTTGAAGCAAAAAAGCTATCAAATTATCAAT
1 CTATCAAATTATCACCAAGACCCTT-AATCAAATCTTGAAGCAAAAAAGCTATCAAATTATCAAT
*
42504 TTAAGAATTTT
65 TCAAGAATTTT
42515 TGCAAAGGAG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 4 0.06
75 64 0.94
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.31
Consensus pattern (75 bp):
CTATCAAATTATCACCAAGACCCTTAATCAAATCTTGAAGCAAAAAAGCTATCAAATTATCAATT
CAAGAATTTT
Done.