Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012446.1 Corchorus olitorius cultivar O-4 contig12479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36240

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
459--497
19
2.1
19
95
0
69
51
5
7
35
1.53
7036--7108
37
2.0
37
94
0
128
57
13
21
6
1.60
7050--7114
18
3.6
18
68
4
58
61
10
23
4
1.47
9733--10191
59
7.7
59
87
6
649
25
14
16
43
1.86
9732--10191
177
2.6
177
91
2
717
25
14
16
43
1.86
10473--10690
29
7.5
29
88
2
285
18
17
22
41
1.91
10473--10690
88
2.5
87
82
8
280
18
17
22
41
1.91
10474--10690
117
1.9
116
87
2
319
18
17
22
41
1.90
19894--19991
30
3.3
30
89
0
133
25
28
16
29
1.97
24448--24472
3
8.3
3
100
0
50
32
0
0
68
0.90
24762--24813
20
2.6
20
87
6
70
19
1
28
50
1.58
28571--28668
34
2.8
35
90
3
162
40
13
17
28
1.87
28960--28995
12
3.0
12
91
0
54
50
13
0
36
1.43

Tables:   1

The End!