genome.fa.s12447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012447.1 Corchorus olitorius cultivar O-4 contig12480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117458

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2121--2152	11	2.8	12	86	13	50	37	6	18	37	1.76
2133--2168	19	1.9	18	88	5	54	41	2	22	33	1.68
2762--2798	18	2.0	19	94	5	67	10	13	10	64	1.49
5529--5582	19	2.6	21	77	19	60	38	18	3	38	1.69
6142--6350	54	3.8	54	76	9	206	28	12	23	35	1.91
6152--6295	58	2.6	58	81	10	156	28	12	22	36	1.91
6390--6487	35	2.8	35	84	0	115	17	18	22	41	1.90
6520--6639	50	2.5	49	84	8	158	29	11	20	39	1.87
6524--6719	96	2.1	92	82	9	227	29	13	19	37	1.90
13427--13664	128	1.9	128	84	3	327	39	15	9	34	1.80
14219--14274	19	2.8	20	81	10	71	12	50	23	14	1.77
15608--15749	28	5.4	28	60	13	84	30	15	17	36	1.91
15556--15975	52	8.0	52	92	1	608	30	15	17	36	1.91
15868--15964	31	3.4	31	67	19	100	29	17	17	35	1.93
17149--17935	332	2.4	332	96	0	1450	34	10	18	36	1.85
17982--18054	29	2.4	30	84	6	94	30	28	9	31	1.89
18623--18653	16	1.9	16	93	0	53	48	6	6	38	1.55
19239--19311	29	2.4	30	81	6	85	35	9	24	30	1.87
19701--19734	17	2.0	17	100	0	68	11	23	23	41	1.87
27672--27748	38	2.0	38	100	0	154	23	15	5	55	1.60
28641--28687	14	3.4	14	70	5	51	59	2	8	29	1.39
28503--28900	149	2.7	149	94	2	667	53	3	7	35	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37265--37306	15	2.7	15	96	3	75	66	14	7	11	1.43
43298--43336	15	2.5	15	95	4	69	66	12	7	12	1.43
44097--44132	18	1.9	18	88	5	54	63	8	16	11	1.49
46240--46318	18	4.4	18	80	0	86	37	37	13	10	1.79
50607--50639	17	2.0	17	94	5	59	12	6	24	57	1.57
51370--51873	42	12.8	38	75	15	176	34	16	15	33	1.91
51486--51719	42	5.6	41	86	6	262	38	16	15	29	1.89
51488--51678	84	2.2	86	87	3	289	39	15	15	28	1.89
51651--51762	37	2.9	39	78	9	113	31	17	18	32	1.95
53589--53630	3	13.7	3	82	9	50	66	2	0	30	1.04
56304--56335	15	2.1	15	100	0	64	50	28	6	15	1.68
56923--57047	66	1.9	64	83	6	162	26	8	22	43	1.81
56953--57095	33	4.3	32	77	7	126	28	8	20	42	1.81
62945--63047	54	1.9	54	90	4	163	37	15	33	13	1.87
63992--64152	84	1.9	85	84	1	216	37	18	21	22	1.94
64073--64127	22	2.5	22	87	0	74	38	16	21	23	1.93
66941--66973	17	2.0	17	94	5	59	12	6	24	57	1.57
67699--68197	42	12.9	39	74	18	216	32	16	16	34	1.91
67753--67887	72	1.9	69	83	7	173	37	15	14	31	1.88
67992--68197	76	2.8	75	88	4	310	30	16	16	36	1.91
70423--70493	21	3.3	21	80	7	79	29	14	8	47	1.73
70867--71046	82	2.1	86	89	6	287	32	12	7	47	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71796--71839	21	2.1	21	83	4	54	27	6	13	52	1.66
73731--73785	22	2.5	22	90	0	92	34	10	12	41	1.78
78799--78898	35	2.9	35	90	0	146	38	21	9	32	1.84
79551--79603	26	2.0	26	82	13	65	39	30	11	18	1.86
82488--82582	35	2.7	36	83	6	113	41	25	11	22	1.87
82526--82590	31	2.0	32	88	11	96	46	24	9	20	1.79
82704--82994	144	2.0	144	92	0	483	36	25	14	23	1.93
86236--86298	25	2.4	27	86	7	94	17	20	3	58	1.52
86325--86437	35	3.1	35	81	9	138	27	11	2	58	1.46
86475--86737	7	37.7	7	67	20	79	20	22	4	52	1.65
86467--86776	21	15.1	21	72	17	228	20	21	5	52	1.67
86472--86776	41	7.5	41	77	14	235	20	21	5	52	1.67
86676--86705	15	2.1	14	93	6	51	20	20	3	56	1.56
86755--86816	31	2.0	31	100	0	124	19	29	6	45	1.75
87271--87333	23	2.8	22	80	11	74	50	6	3	39	1.44
90399--90442	19	2.4	18	85	7	54	75	9	6	9	1.20
90264--90648	204	1.9	205	96	1	718	50	13	15	20	1.78
90617--90655	19	2.1	19	85	4	53	71	2	15	10	1.23
90761--91281	46	11.2	47	84	4	630	38	22	27	11	1.88
90761--91276	93	5.5	92	84	5	644	38	22	27	11	1.88
90757--91281	141	3.8	139	85	5	666	38	22	27	11	1.88
92076--92123	20	2.4	20	100	0	96	54	12	20	12	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93641--93682	21	2.0	21	90	0	66	28	23	16	30	1.96
93798--93856	21	2.8	21	97	0	109	25	27	22	25	2.00
97201--97271	21	3.4	20	84	11	90	28	25	15	30	1.96
98451--98589	35	4.1	35	86	6	171	44	25	10	19	1.83
100381--100440	30	1.9	32	86	6	88	35	18	3	43	1.67
101225--101319	36	2.7	36	85	8	140	21	27	8	43	1.81
107343--107380	20	1.9	20	94	0	67	36	10	28	23	1.88
115361--115518	60	2.6	60	85	2	201	29	17	16	37	1.91
116249--116348	29	3.4	29	68	15	87	29	20	17	34	1.95
116217--116379	60	2.7	60	90	1	238	27	18	17	36	1.93
114921--116644	861	2.0	861	93	0	2982	32	18	15	33	1.92
117418--117452	2	17.5	2	100	0	70	48	0	0	51	1.00

Tables:   1

The End!