Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012452.1 Corchorus olitorius cultivar O-4 contig12485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31501

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3396--3431
18
2.0
18
94
0
63
30
16
16
36
1.91
3399--3438
18
2.2
18
86
0
53
35
10
15
40
1.80
4835--4974
49
2.9
48
81
4
156
28
17
5
49
1.67
10216--10340
65
1.9
65
88
0
187
22
26
27
24
2.00
11509--11549
21
2.0
21
85
0
55
34
7
24
34
1.83
16367--16496
65
2.0
65
87
0
188
22
26
27
23
2.00
20642--20787
49
3.0
49
88
7
210
30
19
4
46
1.68
21304--21477
87
2.0
88
85
1
233
36
17
13
32
1.89
23100--23136
16
2.2
17
90
4
58
43
40
10
5
1.63
24729--24766
15
2.4
17
87
12
55
36
39
15
7
1.77
25089--25207
58
2.1
58
100
0
238
39
22
5
31
1.78
25423--25461
19
2.0
20
90
5
62
76
2
5
15
1.06
25422--25484
28
2.3
28
89
8
94
74
3
6
15
1.15
25596--25620
11
2.3
11
100
0
50
76
0
8
16
1.02
26054--26096
7
5.9
7
78
10
50
79
0
2
18
0.85
26843--26921
35
2.3
35
97
0
149
15
11
21
51
1.74
27612--27656
15
3.0
15
86
0
63
20
31
22
26
1.98
28397--28484
25
3.6
25
87
4
117
20
14
7
56
1.63
29619--29657
15
2.6
15
95
0
69
23
56
12
7
1.62
29646--29672
14
1.9
14
100
0
54
22
59
7
11
1.56

Tables:   1

The End!