Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012455.1 Corchorus olitorius cultivar O-4 contig12488, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60489

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12388--12415
1
28.0
1
100
0
56
100
0
0
0
0.00
13575--13664
29
3.0
30
72
8
85
26
12
22
38
1.89
13684--13721
2
19.5
2
94
5
69
52
0
0
47
1.00
23884--23954
29
2.4
31
76
4
74
19
22
18
39
1.92
24712--24779
32
2.2
31
81
5
84
22
26
20
30
1.98
25385--25419
2
17.5
2
100
0
70
48
0
0
51
1.00
26124--26184
32
2.0
29
90
9
95
52
0
3
44
1.17
29497--29865
154
2.4
154
97
0
702
37
13
15
33
1.86
29852--29937
43
2.0
43
97
0
163
25
33
16
24
1.95
33089--33114
2
13.0
2
100
0
52
50
0
0
50
1.00
36098--36395
93
2.9
102
83
14
409
33
23
15
26
1.95
39338--39393
27
2.1
27
93
6
96
44
3
25
26
1.70

Tables:   1

The End!