Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012460.1 Corchorus olitorius cultivar O-4 contig12493, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64138

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1765--1792
2
14.0
2
100
0
56
0
50
0
50
1.00
25661--25726
33
2.0
33
100
0
132
18
21
18
42
1.89
28661--28742
41
2.0
41
100
0
164
39
29
12
19
1.88
29861--29941
28
2.8
28
76
14
76
35
17
18
28
1.93
34264--34297
17
1.9
17
88
5
50
14
20
14
50
1.78
40799--40871
36
2.0
36
94
0
128
31
16
19
32
1.94
40884--40953
34
2.1
34
81
5
79
28
18
11
41
1.85
41387--41419
15
2.1
16
94
5
59
45
21
3
30
1.67
42540--42578
20
2.0
20
84
0
51
41
5
2
51
1.38
43933--44066
48
3.0
44
81
11
166
22
35
17
24
1.95
44243--44383
18
8.2
17
79
13
141
6
25
21
46
1.75
44243--44383
36
4.1
36
75
17
156
6
25
21
46
1.75
44217--44367
65
2.3
64
88
5
223
6
24
20
48
1.73
63880--63918
14
2.9
13
80
3
51
41
2
2
53
1.28

Tables:   1

The End!