genome.fa.s12464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012464.1 Corchorus olitorius cultivar O-4 contig12497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99241

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11626--11713	29	3.0	29	96	0	158	43	17	11	28	1.83
13689--13819	60	2.2	60	95	1	237	36	16	8	38	1.78
18932--18956	13	1.9	13	100	0	50	88	0	0	12	0.53
19937--20045	49	2.2	50	93	3	184	31	18	8	42	1.80
22133--22169	19	1.9	19	89	10	58	62	2	32	2	1.23
23156--23199	23	2.0	22	90	4	70	40	9	15	34	1.79
24457--24492	18	2.0	18	100	0	72	33	11	0	55	1.35
25522--25654	60	2.3	58	84	7	171	39	13	9	36	1.78
31463--31526	21	3.1	21	93	2	112	28	26	14	31	1.95
33449--33502	24	2.2	24	87	12	74	42	3	27	25	1.72
33449--33500	28	1.9	26	88	7	77	40	3	28	26	1.74
34367--34413	21	2.2	21	96	0	85	27	29	12	29	1.93
37913--37950	10	3.7	10	96	3	67	84	0	0	15	0.63
37908--37953	11	4.1	12	78	13	53	78	0	0	21	0.76
37913--37954	22	2.0	21	90	4	66	80	0	0	19	0.70
37913--37951	11	3.6	11	86	13	55	84	0	0	15	0.62
42089--42434	181	1.9	181	85	3	482	23	10	24	40	1.86
61082--61207	50	2.5	50	96	0	225	23	26	11	38	1.89
61280--61594	64	4.9	64	86	1	425	27	23	15	33	1.95
61256--61689	64	6.7	64	83	4	419	27	24	14	33	1.94
61576--61736	67	2.4	67	88	1	232	29	23	13	34	1.92
66183--66217	15	2.5	14	90	9	54	40	11	8	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67382--67477	42	2.3	42	83	5	124	44	11	18	25	1.83
72401--72472	27	2.6	28	76	6	76	41	23	18	16	1.89
72731--72827	26	3.7	26	81	8	108	35	23	22	18	1.96
73782--73815	7	4.9	7	85	0	50	64	0	5	29	1.17
81819--81908	33	2.7	33	87	0	135	44	26	7	21	1.79
86756--86785	15	1.9	16	93	6	53	46	0	0	53	1.00
87315--87340	13	2.0	13	100	0	52	46	15	15	23	1.83
88465--88516	22	2.4	22	74	6	52	25	5	9	59	1.51
89793--89901	21	5.2	21	81	0	128	37	7	26	28	1.83
89793--89901	42	2.6	42	91	0	173	37	7	26	28	1.83
97529--97638	54	2.0	54	100	0	220	38	16	22	22	1.93
99091--99131	21	2.0	21	85	9	57	34	9	26	29	1.88

Tables:   1

The End!