Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012466.1 Corchorus olitorius cultivar O-4 contig12499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17034

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127--228
51
2.0
50
81
9
118
22
22
13
41
1.89
4062--4114
16
3.2
17
84
15
67
77
0
13
9
0.99
4075--4114
8
5.0
8
85
11
55
77
0
12
10
0.99
4517--4569
7
7.6
7
86
14
74
75
11
0
13
1.05
4517--4569
22
2.5
20
80
14
70
75
11
0
13
1.05
4508--4573
29
2.4
28
87
9
100
75
10
0
13
1.04
4523--4572
22
2.2
22
92
3
82
78
10
0
12
0.98
4492--4570
7
11.0
7
77
8
61
74
8
0
16
1.05
5929--6622
169
4.1
169
89
1
1041
28
20
16
34
1.94
6711--7133
30
13.1
36
78
17
308
20
13
17
48
1.80
6787--7307
30
17.1
30
86
4
695
19
14
17
47
1.82
7400--7501
39
2.6
39
92
0
159
22
13
15
48
1.81
7401--7548
78
1.9
78
82
8
185
22
12
15
49
1.78
16581--16622
15
2.7
15
92
3
66
11
9
14
64
1.50

Tables:   1

The End!