Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012467.1 Corchorus olitorius cultivar O-4 contig12500, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4152
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27


Found at i:101 original size:17 final size:18

Alignment explanation


    Indices: 69--103  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

         59 CTACTAACAA

                              
         69 TTTTTCTTTTGTAGTTTT
          1 TTTTTCTTTTGTAGTTTT

                 *            
         87 TTTTTTTTTTG-AGTTTT
          1 TTTTTCTTTTGTAGTTTT

        104 ATTAGGAATC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    6  0.38
  18   10  0.62

ACGTcount: A:0.06, C:0.03, G:0.11, T:0.80


Consensus pattern (18 bp):   
TTTTTCTTTTGTAGTTTT

Found at i:3602 original size:15 final size:14

Alignment explanation


    Indices: 3582--3611  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       3572 ATCTCTTTAA

                           
       3582 TTTTCCTTGCATTAT
          1 TTTTCCTTG-ATTAT

                          
       3597 TTTTCCTTGATTAT
          1 TTTTCCTTGATTAT

             
       3611 T
          1 T

       3612 GCTTTAATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63


Consensus pattern (14 bp):   
TTTTCCTTGATTAT
Done.