Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001247.1 Corchorus olitorius cultivar O-4 contig01247, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1071
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28


Found at i:156 original size:21 final size:21

Alignment explanation


    Indices: 138--185  Score: 78
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        128 GAATGGTGAG

                        *        
        138 GGCACGGGCATAGCCGGTGGT
          1 GGCACGGGCATAACCGGTGGT

                     *           
        159 GGCACGGGCTTAACCGGTGGT
          1 GGCACGGGCATAACCGGTGGT

                  
        180 GGCACG
          1 GGCACG

        186 ACAATGGGCG


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.15, C:0.25, G:0.46, T:0.15


Consensus pattern (21 bp):   
GGCACGGGCATAACCGGTGGT

Done.