Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012471.1 Corchorus olitorius cultivar O-4 contig12504, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36481

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2539--2609
35
2.0
35
91
0
115
45
12
12
29
1.79
12001--12043
18
2.4
19
92
7
72
51
23
9
16
1.73
20712--20904
22
8.7
22
73
8
142
36
8
17
37
1.81
20710--20840
66
2.0
66
83
5
167
37
9
16
35
1.82
20779--20922
44
3.2
45
77
9
118
37
8
16
37
1.79
20927--21363
22
19.7
22
67
14
106
40
10
14
34
1.81
21464--21981
22
23.5
22
68
15
135
37
8
16
37
1.80
21456--21898
44
10.0
44
69
13
178
36
9
16
37
1.81
22897--22935
20
1.9
20
89
5
60
58
7
2
30
1.39
23080--23588
255
2.0
254
87
2
745
43
11
23
22
1.85
23749--23788
22
1.9
21
85
10
55
35
10
0
55
1.34
26225--26252
13
2.2
13
100
0
56
35
0
35
28
1.58
30470--30501
12
2.4
14
85
15
50
18
21
18
40
1.91

Tables:   1

The End!