Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012472.1 Corchorus olitorius cultivar O-4 contig12505, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44495

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
511--567
22
2.6
22
80
0
69
7
26
40
26
1.81
551--621
28
2.5
28
93
0
124
5
21
38
35
1.77
1073--1135
13
5.0
13
86
7
94
39
15
20
23
1.91
1067--1135
25
2.8
25
95
0
120
39
17
18
24
1.92
1067--1135
12
5.6
12
86
6
93
39
17
18
24
1.92
2065--2122
20
3.1
19
73
22
59
36
17
22
24
1.95
3023--3074
17
3.2
17
67
10
54
57
21
3
17
1.55
3050--3094
23
2.0
21
83
8
54
64
13
6
15
1.47
11691--11727
6
6.3
6
93
6
67
35
16
0
48
1.46
11815--12050
131
1.8
132
83
5
311
38
9
1
50
1.46
19804--19828
2
12.5
2
100
0
50
52
0
48
0
1.00
31613--31647
17
1.9
19
88
11
56
34
0
8
57
1.29
31676--31754
40
2.0
40
82
5
97
34
7
5
53
1.51
32883--32916
17
1.9
17
88
5
50
26
11
5
55
1.58

Tables:   1

The End!