Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012478.1 Corchorus olitorius cultivar O-4 contig12511, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2492
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:189 original size:12 final size:12

Alignment explanation


    Indices: 172--196  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        162 TTTGATTCAC

                        
        172 TTTTGATTTGAA
          1 TTTTGATTTGAA

                        
        184 TTTTGATTTGAA
          1 TTTTGATTTGAA

             
        196 T
          1 T

        197 CACTTGATGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60


Consensus pattern (12 bp):   
TTTTGATTTGAA
Done.