Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012482.1 Corchorus olitorius cultivar O-4 contig12515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4391
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.33


Found at i:750 original size:14 final size:13

Alignment explanation


    Indices: 685--749  Score: 87
    Period size: 14  Copynumber: 4.8  Consensus size: 13

        675 ACTCAAAACC

                          
        685 TTTTTGAAAACTCA
          1 TTTTTGAAAA-TCA

                         
        699 TTTTTGAAAATCA
          1 TTTTTGAAAATCA

                          
        712 TTTCTTGAAAA-CA
          1 TTT-TTGAAAATCA

                           
        725 GTTTCTTGAAAATCA
          1 -TTT-TTGAAAATCA

                      
        740 TTTTTGAAAA
          1 TTTTTGAAAA

        750 AATCCTTTAT


Statistics
Matches: 48,  Mismatches: 0, Indels: 7
        0.87            0.00        0.13

Matches are distributed among these distances:
  13   15  0.31
  14   31  0.65
  15    2  0.04

ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43


Consensus pattern (13 bp):   
TTTTTGAAAATCA

Found at i:4354 original size:7 final size:7

Alignment explanation


    Indices: 4344--4369  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       4334 AATTTTGAAA

                   
       4344 TTTTGAC
          1 TTTTGAC

                   
       4351 TTTTGAC
          1 TTTTGAC

                   
       4358 TTTTGAC
          1 TTTTGAC

                 
       4365 TTTTG
          1 TTTTG

       4370 GAGAATGAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.12, C:0.12, G:0.15, T:0.62


Consensus pattern (7 bp):   
TTTTGAC
Done.