Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012484.1 Corchorus olitorius cultivar O-4 contig12517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36737

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1305--1400
21
4.8
21
86
10
146
28
11
20
39
1.87
1493--1700
21
9.9
21
80
3
213
35
24
12
27
1.92
1493--1704
42
5.0
42
85
2
291
34
24
13
28
1.93
3187--3217
10
3.1
10
95
0
53
32
0
16
51
1.44
6363--6395
5
6.8
5
93
6
59
21
0
0
78
0.75
6363--6395
14
2.3
15
94
5
50
21
0
0
78
0.75
8388--8426
20
2.0
20
94
0
69
58
10
15
15
1.62
8372--8542
68
2.5
67
91
0
261
52
16
19
11
1.74
8449--8495
20
2.3
20
92
0
76
65
8
10
14
1.45
8476--8614
48
2.9
47
91
1
215
44
21
21
12
1.85
8476--8614
47
2.9
48
92
2
226
44
21
21
12
1.85
8586--9012
41
10.7
41
77
10
330
36
22
25
15
1.93
8586--8897
81
3.8
81
89
4
450
35
21
26
15
1.93
8586--9015
122
3.6
121
79
10
433
36
22
25
15
1.94
8911--9046
31
4.1
32
74
22
127
38
24
22
14
1.92
8870--9047
72
2.5
72
97
0
329
36
23
24
15
1.94
9069--9780
46
15.9
46
78
9
652
35
16
26
21
1.95
9077--9764
177
3.9
181
84
6
809
34
16
27
21
1.95
17920--17962
15
3.0
15
86
6
63
11
0
9
79
0.95
24461--24502
16
2.6
16
85
7
50
16
9
9
64
1.49
24664--29784
904
5.7
907
85
4
6948
36
16
13
33
1.88
30383--30442
27
2.2
27
82
8
68
40
15
11
33
1.83

Tables:   1

The End!