Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012486.1 Corchorus olitorius cultivar O-4 contig12519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26930

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68--97
5
6.0
5
96
0
51
76
20
0
3
0.92
683--708
13
2.0
13
100
0
52
46
15
0
38
1.46
819--864
19
2.3
20
85
10
60
63
0
4
32
1.14
4520--4558
20
1.9
20
89
5
60
76
0
10
12
1.01
5254--5348
45
2.1
45
94
0
163
34
14
6
44
1.71
6966--7011
24
1.9
23
86
8
65
0
8
13
78
0.97
7495--7528
17
2.0
17
94
0
59
58
17
2
20
1.51
8591--8626
18
1.9
18
94
5
63
75
0
16
8
1.04
8593--8626
6
5.5
6
89
3
50
76
0
17
5
0.98
8642--8691
10
5.4
9
77
18
50
74
0
26
0
0.83
8643--8690
16
3.0
17
88
8
66
77
0
22
0
0.78
8653--8690
5
8.0
5
82
11
53
78
0
21
0
0.74
12028--12289
107
2.5
102
87
4
375
39
9
9
41
1.70
23010--23055
20
2.3
20
85
7
67
26
32
23
17
1.97
23319--23732
206
2.0
206
98
0
801
42
11
9
36
1.75
25404--25432
12
2.3
13
94
5
51
0
37
0
62
0.96

Tables:   1

The End!