Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012488.1 Corchorus olitorius cultivar O-4 contig12521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61795

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1136
199
5.7
200
89
2
1600
34
13
19
33
1.90
1--1136
401
2.8
399
87
4
1631
34
13
19
33
1.90
1145--1175
16
1.9
16
93
0
53
45
6
9
38
1.63
6788--6896
12
9.1
12
74
4
85
32
9
50
8
1.64
6790--6903
18
6.3
18
71
4
86
30
11
50
7
1.65
6790--6903
6
19.0
6
78
3
77
30
11
50
7
1.65
6970--6995
6
4.3
6
100
0
52
34
0
50
15
1.45
11874--11902
14
2.0
15
93
6
51
82
0
6
10
0.83
13593--14042
47
10.0
47
87
7
582
46
5
18
29
1.70
13649--13721
35
2.1
35
89
0
110
43
5
17
32
1.72
13611--14051
91
5.0
85
84
11
491
46
5
18
29
1.70
13593--14047
182
2.6
174
87
7
657
47
5
18
29
1.70
28202--28504
152
2.0
151
98
0
579
36
16
13
33
1.88
38432--38573
52
2.7
52
93
0
230
33
16
17
32
1.93
38541--38691
42
3.8
38
78
13
153
35
17
15
31
1.91
39268--39335
34
2.0
34
100
0
136
52
14
2
29
1.56
40950--41051
30
3.3
30
67
12
89
49
18
4
27
1.68
40950--41154
63
3.3
63
88
2
304
46
18
6
28
1.74
41602--41638
18
2.1
18
100
0
74
35
21
21
21
1.96
61720--61795
23
3.3
23
90
0
116
51
22
7
18
1.72

Tables:   1

The End!