Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012489.1 Corchorus olitorius cultivar O-4 contig12522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49324

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13--390
40
9.1
40
82
8
411
17
25
20
36
1.94
13--308
81
3.7
80
86
5
407
18
22
20
38
1.94
318--430
40
2.8
39
84
4
136
14
30
21
34
1.93
402--783
48
8.0
48
91
1
595
12
22
21
43
1.86
3007--3051
12
3.7
12
94
5
81
35
6
24
33
1.82
5183--5222
2
20.0
2
100
0
80
50
0
0
50
1.00
5913--5962
21
2.4
21
96
0
91
28
14
18
40
1.89
14272--14299
14
2.0
14
100
0
56
42
14
28
14
1.84
14324--14805
177
2.7
176
80
3
522
33
14
16
35
1.89
20212--20284
29
2.5
29
80
10
87
23
10
27
38
1.88
31271--31329
6
9.2
6
78
14
64
76
15
5
3
1.10
31271--31329
20
3.1
18
85
9
64
76
15
5
3
1.10
37859--37893
18
1.9
18
88
0
52
80
0
17
2
0.84
41709--41741
2
16.5
2
93
0
57
45
0
3
51
1.16
43749--43866
62
1.9
61
87
3
175
18
23
22
35
1.96
43789--43843
26
2.1
27
82
3
67
14
23
23
38
1.92
43806--44784
36
27.3
35
86
4
1217
17
20
18
42
1.89
43806--44784
143
6.8
142
87
2
1282
17
20
18
42
1.89
44918--45068
69
2.2
69
85
2
196
23
27
17
31
1.97
45391--46222
30
27.4
30
90
2
1223
20
12
18
48
1.81
46719--46788
27
2.6
27
95
0
122
17
15
20
47
1.83
48837--48906
27
2.6
27
93
0
113
17
15
21
45
1.85

Tables:   1

The End!