Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001249.1 Corchorus olitorius cultivar O-4 contig01249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8448
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36


Found at i:7785 original size:2 final size:2

Alignment explanation


    Indices: 7778--7824  Score: 87
    Period size: 2  Copynumber: 24.0  Consensus size: 2

       7768 GGAATACAAC

                                                                          
       7778 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                    
       7819 TA TA TA
          1 TA TA TA

       7825 CTAGCTAATG


Statistics
Matches: 44,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   43  0.98

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:8137 original size:49 final size:49

Alignment explanation


    Indices: 8065--8162  Score: 187
    Period size: 49  Copynumber: 2.0  Consensus size: 49

       8055 CAAATTCAGC

                                                             
       8065 AACCTTACATTAATAATCCTTCAATGCTAATGAATGATAAAAAGTCTTA
          1 AACCTTACATTAATAATCCTTCAATGCTAATGAATGATAAAAAGTCTTA

                              *                              
       8114 AACCTTACATTAATAATCTTTCAATGCTAATGAATGATAAAAAGTCTTA
          1 AACCTTACATTAATAATCCTTCAATGCTAATGAATGATAAAAAGTCTTA

       8163 TCTAAAGTTA


Statistics
Matches: 48,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  49   48  1.00

ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34


Consensus pattern (49 bp):   
AACCTTACATTAATAATCCTTCAATGCTAATGAATGATAAAAAGTCTTA
Done.