Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012493.1 Corchorus olitorius cultivar O-4 contig12526, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57700

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
558--603
23
2.0
23
87
8
67
17
28
6
47
1.72
784--854
33
2.2
33
89
2
108
21
29
1
47
1.59
889--954
33
2.0
33
96
0
123
31
21
19
27
1.97
962--1019
29
2.0
29
93
0
98
27
20
17
34
1.95
6479--6524
23
2.0
23
87
8
67
17
26
6
50
1.70
6938--6972
13
2.9
12
88
12
54
65
0
2
31
1.07
8118--8151
14
2.4
14
95
0
59
23
8
0
67
1.18
8179--8209
15
2.1
15
100
0
62
19
6
12
61
1.53
8653--8686
14
2.4
14
95
0
59
23
8
0
67
1.18
8714--8744
15
2.1
15
100
0
62
19
6
12
61
1.53
7886--8947
535
2.0
527
98
1
2034
31
9
9
49
1.67
9631--9661
6
5.2
6
96
0
53
16
67
12
3
1.35
16543--16573
2
15.5
2
100
0
62
51
0
48
0
1.00
18157--18183
12
2.2
12
100
0
54
33
33
7
25
1.84
22741--22797
28
2.0
28
96
0
105
29
19
21
29
1.97
27031--27064
17
2.1
17
94
5
61
67
8
11
11
1.42
28063--28106
21
2.1
21
82
0
52
15
13
27
43
1.85
33905--34060
55
2.8
54
88
3
222
38
2
28
30
1.70
34994--35129
42
3.3
41
67
14
118
13
5
26
54
1.60
35011--35137
39
3.2
38
66
14
103
14
4
27
52
1.62
35007--35173
81
2.1
81
95
0
298
13
5
28
52
1.63
35750--35788
19
2.0
20
85
5
53
61
20
0
17
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35853--35957
35
2.9
35
78
12
106
23
16
20
39
1.92
43106--43234
45
2.9
45
92
2
206
36
6
19
37
1.77
47822--47858
19
1.9
19
89
10
58
24
5
5
64
1.36
48989--49024
18
2.0
18
88
0
54
22
11
27
38
1.88

Tables:   1

The End!