Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012495.1 Corchorus olitorius cultivar O-4 contig12528, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65414

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155--217
33
1.9
33
96
0
117
19
36
28
15
1.92
887--941
16
3.4
16
73
14
58
40
0
30
29
1.57
892--955
33
1.9
34
90
3
103
40
0
29
29
1.57
1095--1185
44
2.1
42
95
4
164
54
6
2
36
1.39
1550--1593
18
2.6
18
92
7
74
11
11
22
54
1.68
1601--1765
61
2.7
60
79
1
195
36
18
15
28
1.92
1772--1898
66
2.0
63
89
10
199
32
22
14
29
1.94
1913--1966
23
2.3
23
87
0
72
37
12
14
35
1.85
2089--2153
34
1.9
34
93
0
112
46
12
10
30
1.76
2180--2296
36
3.0
36
80
17
135
50
12
9
27
1.71
2317--2458
75
1.9
75
98
0
275
32
13
6
47
1.68
11647--11681
17
2.1
17
94
0
61
40
14
0
45
1.45
13276--13307
11
2.9
11
95
0
55
9
9
21
59
1.57
13563--13631
20
3.5
20
67
15
54
46
2
1
49
1.25
13554--13644
40
2.2
40
83
9
114
48
2
1
48
1.21
17657--17739
30
2.7
32
78
15
79
45
3
4
45
1.42
17654--17739
31
2.7
33
73
20
83
47
3
4
44
1.40
17689--17779
40
2.2
40
83
9
114
49
1
2
47
1.21
17817--17848
11
2.9
11
95
0
55
59
21
9
9
1.57
21078--21102
3
8.3
3
100
0
50
68
0
32
0
0.90
32542--32566
2
12.5
2
100
0
50
52
0
48
0
1.00
35259--35306
19
2.5
19
83
10
62
35
2
4
58
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37766--37801
18
2.0
18
89
10
56
61
2
13
22
1.46
39652--39707
28
2.0
28
86
6
78
62
3
1
32
1.23
39801--39825
13
1.9
13
100
0
50
32
44
0
24
1.54
42953--42978
11
2.4
11
100
0
52
69
7
15
7
1.35
44862--44894
16
2.1
16
100
0
66
36
6
18
39
1.75
54326--54354
1
29.0
1
100
0
58
0
0
0
100
0.00
56088--56196
31
3.5
31
79
9
116
39
19
9
32
1.83
57140--57280
49
3.0
47
82
10
169
50
5
16
27
1.67
57650--57674
13
1.9
13
100
0
50
16
0
40
44
1.47
58560--58599
9
4.7
9
90
6
57
30
17
0
52
1.45
58560--58599
17
2.4
17
87
8
55
30
17
0
52
1.45

Tables:   1

The End!