Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012496.1 Corchorus olitorius cultivar O-4 contig12529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9585

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4048--4174
36
3.5
36
91
4
193
28
22
32
16
1.96
4054--4188
36
3.8
36
89
3
182
28
23
32
15
1.95
6596--6720
54
2.2
56
90
4
191
21
31
33
13
1.92
6594--6689
27
3.6
27
75
6
97
25
29
32
13
1.94
6619--6708
27
3.3
28
76
4
103
24
30
34
11
1.90
6792--6839
14
3.4
14
80
8
53
75
6
0
18
1.01
6792--6839
17
2.8
17
87
3
60
75
6
0
18
1.01
6787--6840
26
2.1
25
86
3
72
77
5
0
16
0.94
6784--6839
28
2.0
27
89
6
85
76
5
0
17
0.96
7524--7581
24
2.6
23
72
8
57
34
6
5
53
1.50
9051--9093
23
1.9
23
85
4
61
79
6
4
9
1.06
9176--9220
19
2.4
19
80
0
54
8
37
11
42
1.72

Tables:   1

The End!