genome.fa.s12497.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012497.1 Corchorus olitorius cultivar O-4 contig12530, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90948

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1158--1189	13	2.5	13	95	5	57	53	0	9	37	1.34
2811--2914	36	2.8	35	70	18	84	24	30	24	21	1.99
3554--3601	24	2.0	25	91	4	80	43	27	12	16	1.84
3557--3611	24	2.2	25	83	9	67	47	29	10	12	1.76
11959--12033	29	2.5	30	82	4	98	33	24	8	34	1.84
12326--12402	29	2.6	30	78	14	86	32	12	24	29	1.93
12995--13022	1	28.0	1	100	0	56	0	0	0	100	0.00
17414--17458	14	3.5	13	81	9	56	33	0	11	55	1.35
22857--22914	24	2.4	24	100	0	116	31	17	31	20	1.96
25004--25085	16	5.2	16	72	5	60	28	17	24	30	1.97
28419--28454	18	2.1	18	89	5	56	13	13	8	63	1.50
33785--34029	41	6.0	41	75	8	189	20	13	17	48	1.81
36112--36147	18	2.1	18	89	5	56	44	5	11	38	1.63
37866--37901	18	2.1	17	89	5	54	13	16	8	61	1.56
48579--48635	21	2.7	21	81	5	62	10	17	52	19	1.73
48595--48636	11	4.0	11	78	9	52	7	16	54	21	1.65
48657--48698	21	2.0	21	85	0	57	4	23	45	26	1.73
56308--56439	65	2.0	65	95	0	237	40	10	30	18	1.85
64177--64225	24	2.1	23	85	11	64	20	34	4	40	1.71
65602--65647	19	2.5	18	79	6	56	36	28	21	13	1.91
66000--66076	27	2.9	27	86	1	102	37	23	19	19	1.94
67333--67384	23	2.2	24	86	6	70	71	11	5	11	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67426--67469	18	2.4	18	88	0	70	18	20	15	45	1.85
69072--69111	19	2.2	18	86	4	53	30	22	2	45	1.66
73642--73666	10	2.5	10	100	0	50	0	8	0	92	0.40
87225--87271	26	1.9	23	87	12	67	40	4	27	27	1.75

Tables:   1

The End!