Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012499.1 Corchorus olitorius cultivar O-4 contig12532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7985

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81--116
13
2.6
15
87
12
51
80
0
19
0
0.71
154--269
46
2.5
45
80
8
144
43
7
22
26
1.80
321--685
41
8.7
41
81
9
416
20
9
26
43
1.83
318--685
84
4.4
84
91
3
598
19
10
26
42
1.84
1613--1778
78
2.1
78
88
2
244
34
12
0
51
1.44
3283--3372
45
2.1
44
89
6
139
38
21
4
35
1.73
2147--4013
934
2.0
930
92
1
3137
36
16
16
30
1.91
5129--5166
11
3.6
11
86
6
53
60
0
0
39
0.97
5682--5711
13
2.2
14
94
5
53
53
3
6
36
1.44
5449--5778
142
2.3
145
83
6
424
53
2
8
35
1.44

Tables:   1

The End!