Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012505.1 Corchorus olitorius cultivar O-4 contig12538, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27341

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--202
50
4.0
50
96
0
350
30
26
13
28
1.94
221--697
35
13.7
33
80
9
402
29
20
23
26
1.99
216--697
70
6.9
69
88
5
534
29
21
22
26
1.99
221--697
174
2.7
175
83
9
566
29
20
23
26
1.99
216--739
209
2.5
210
85
6
656
29
20
23
26
1.99
1095--1169
27
2.7
28
83
4
89
21
14
24
40
1.90
6879--6923
1
45.0
1
81
0
54
0
0
8
91
0.43
6880--6923
23
1.9
23
95
0
79
0
0
9
90
0.44
6878--6923
11
4.0
11
91
8
74
0
0
10
89
0.50
6881--6931
23
2.2
24
86
10
70
1
1
9
86
0.73
9119--9154
15
2.3
16
90
4
56
13
11
11
63
1.51
9563--9605
24
1.9
23
86
13
63
51
6
11
30
1.65
14614--14649
19
2.0
17
89
10
54
38
8
22
30
1.83
16033--16072
15
2.6
16
92
4
64
12
10
12
65
1.49
16586--16629
21
2.1
21
83
8
54
34
22
18
25
1.96

Tables:   1

The End!