Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012506.1 Corchorus olitorius cultivar O-4 contig12539, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7284
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:5106 original size:3 final size:3

Alignment explanation


    Indices: 5098--5144  Score: 94
    Period size: 3  Copynumber: 15.7  Consensus size: 3

       5088 CAAGGTTAAT

                                                                          
       5098 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT

       5145 AAAGTGATTG


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   44  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTC

Done.